Dr. ZHANG/Jianwei (张建伟)

Member
National Key Laboratory of Crop Genetic Improvement
Professor
College of Life Science and Technology | College of Informatics

Email: jzhang@mail.hzau.edu.cn
Tel: +86-27-87286166

Address:
National Key Laboratory of Crop Genetic Improvement #B107-2
Huazhong Agricultural University
Wuhan 430070, China

Research Interest:  Bioinformatics, Genomics

ORCID iD https://orcid.org/0000-0001-8030-5346

Selected Publications: (^#co-first authors, ^*corresponding authors)

1. Huang Y, Wang Z, Schmidt M, Su H, Xiong L and Zhang J^*. DEGAP: Dynamic elongation of a genome assembly path. Briefings in Bioinformatics, 2024, 25(3):bbae194. DOI: 10.1093/bib/bbae194
2. Wang H^#, Fang T^#, Li X^#, Xie Y^#, Wang W, Hu T, Kudrna D, Amombo E, Yin Y, Fan S, Gong Z, Huang Y, Xia C, Zhang J^*, Wu Y^* and Fu J^*. Whole-genome sequencing of allotetraploid bermudagrass reveals the origin of Cynodon and candidate genes for salt tolerance. The Plant Journal, 2024, 118:2068-2084. DOI: 10.1111/tpj.16729
3. Huang Y, Koo D-H, Mao Y, Herman E, Zhang J^* and Schmidt M^*. A complete reference genome for the soybean cv. Jack. Plant Communications, 2024, 5(2):100765. DOI: 10.1016/j.xplc.2023.100765
4. Yu Z^#, Chen Y^#, Zhou Y^#, Zhang Y, Li M, Ouyang Y, Chebotarov D, Mauleon R, Zhao H, Xie W, McNally K, Wing R^*, Guo W^* and Zhang J^*. Rice Gene Index: a comprehensive pan-genome database for comparative and functional genomics of Asian rice. Molecular Plant, 2023, 16(5):798-801. DOI: 10.1016/j.molp.2023.03.012
5. Zhou Y^#, Yu Z^#, Chebotarov D^#, Chougule K^#, Lu Z, Rivera L, Kathiresan N, Al-Bader N, Mohammed N, Alsantely A, Mussurova S, Santos J, Thimma M, Troukhan M, Fornasiero A, Green C, Copetti D, Kudrna D, Llaca V, Lorieux M, Zuccolo A^*, Ware D^*, McNally K^*, Zhang J^* and Wing R^*. Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice. Nature Communications, 2023, 4:1567. DOI: 10.1038/s41467-023-37004-y
6. Yi X, Liu J, Chen S, Wu H, Liu M, Xu Q, Lei L, Lee S, Zhang B, Kudrna D, Fan W, Wing R, Wang X, Zhang M, Zhang J^*, Yang C^*, Chen N^*. Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics. G3 Genes|Genomes|Genetics, 2022, 12(4):jkac017. DOI: 10.1093/g3journal/jkac017
7. Song J-M^#, Xie W-Z^#, Wang S^#, Guo Y-X, Koo D-H, Kudrna D, Gong C, Huang Y, Feng J-W, Zhang W, Zhou Y, Zuccolo A, Long E, Lee S, Talag J, Zhou R, Zhu X-T, Yuan D, Udall J, Xie W, Wing R, Zhang Q, Poland J^*, Zhang J^* and Chen L-L^*. Two gap-free reference genomes and a global view of the centromere architecture in rice. Molecular Plant, 2021, 14(10):1757-1767. DOI: 10.1016/j.molp.2021.06.018
8. Wu Z^#, Liu H^#, Zhan W^#, Yu Z, Qin E, Liu S, Yang T, Xiang N, Kudrna D, Chen Y, Lee S, Li G, Wing R, Liu J, Xiong H, Xia C, Xing Y, Zhang J^* and Qin R^*. The chromosome-scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis. Plant Biotechnology Journal, 2021, 19:1725-1742. DOI: 10.1111/pbi.13586
9. Zhou Y^#, Chebotarov D^#, Kudrna D, Llaca V, Lee S, Rajasekar S, Mohammed N, Al-Bader N, Sobel-Sorenson C, Parakkal P, Arbelaez L, Franco N, Alexandrov N, Hamilton N, Leung H, Mauleon R, Lorieux M, Zuccolo A^*, McNally K, Zhang J^* and Wing R^*. A platinum standard pan-genome resource that represents the population structure of Asian rice. Scientific Data, 2020, 7:113. DOI: 10.1038/s41597-020-0438-2
10. Song J-M, Lei Y, Shu C-C, Ding Y, Xing F, Liu H, Wang J, Xie W, Zhang J^* and Chen L-L^*. Rice Information GateWay: A Comprehensive Bioinformatics Platform for Indica Rice Genomes. Molecular Plant, 2018, 11(3):505-507. DOI: 10.1016/j.molp.2017.10.003
11. Zhang J^#, Chen L^#, Sun S, Kudrna D, Copetti D, Li W, Mu T, Jiao W, Xing F, Lee S, Talag J, Song J, Du B, Xie W, Luo M, Maldonado C, Goicoechea J, Xiong L, Wu C, Xing Y, Zhou D, Yu S, Zhao Y, Wang G, Yu Y, Luo Y, Hurtado B, Danowitz A, Wing R^* and Zhang Q^*. Building two indicarice reference genomes with PacBio long read and Illumina paired-end sequencing data. Scientific Data, 2016,3:160076. DOI: 10.1038/sdata.2016.76
12. Zhang J^#, Chen L^#, Xing F^#, Kudrna D, Yao W, Copetti D, Mu T, Li W, Song J, Xie W, Lee S, Talag J, Shao L, An Y, Zhang C, Ouyang Y, Sun S, Jiao W, Lv F, Du B, Luo M, Maldonado C, Goicoechea J, Xiong L, Wu C, Xing Y, Zhou D, Yu S, Zhao Y, Wang G, Yu Y, Luo Y, Zhou Z, Hurtado B, Danowitz A, Wing R^*and Zhang Q^*. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proceedings of the National Academy of Sciences of the United States of America, 2016, 113(35):E5163-E5171. DOI: 10.1073/pnas.1611012113
13. Zhang J^*, Kudrna D, Mu T, Li W, Copetti D, Yu Y, Goicoechea J, Lei Y and Wing R^*. Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences. Bioinformatics, 2016, 32(20):3058-3064. DOI: 10.1093/bioinformatics/btw370
14. Wei F^#, Zhang J^#, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga B, Wissotski M, Golser W, Rock S, Graves T, Fulton R, Coe E, Schnable P, Schwartz D, Ware D, Clifton S, Wilson R and Wing R. The Physical and Genetic Framework of the Maize B73 Genome. PLoS Genetics, 2009, 5(11):e1000715. DOI: 10.1371/journal.pgen.1000715
15. Zhang J, Li C, Wu C, Xiong L, Chen G, Zhang Q and Wang S. RMD: a rice mutant database for functional analysis of the rice genome. Nucleic Acids Research, 2006, 34:D745-748. DOI: 10.1093/nar/gkj016
16. Zhang J, Feng Q, Jin C, Qiu D, Zhang L, Xie K, Yuan D, Han B, Zhang Q and Wang S. Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63. The Plant Journal, 2005, 42:772-780. DOI: 10.1111/j.1365-313X.2005.02408.x

Full list of publications